Cluster: HRGMv2_1754_CGC10
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1754
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1754_4 | HRGMv2_1754_4_16 | 14739 | 16757 | - | GT41 |
| pfam | HRGMv2_1754_4 | HRGMv2_1754_4_17 | 16797 | 18134 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | HRGMv2_1754_4 | HRGMv2_1754_4_18 | 18300 | 19016 | + | 9.B.20.2.2 |
Gene ID: HRGMv2_1754_4_16
Type: CAZyme
Location: 14739 - 16757 (-)
Type: CAZyme
Location: 14739 - 16757 (-)
Gene ID: HRGMv2_1754_4_17
Type: pfam
Location: 16797 - 18134 (-)
Type: pfam
Location: 16797 - 18134 (-)
Gene ID: HRGMv2_1754_4_18
Type: TC
Location: 18300 - 19016 (+)
Type: TC
Location: 18300 - 19016 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1754_4_18 | vegetarian > omnivore | 1.19277 | 0.00460 |