Cluster: HRGMv2_1753_CGC9
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1753_5 | HRGMv2_1753_5_132 | 147627 | 148397 | + | GT25 |
| NULL(UNKNOWN) | HRGMv2_1753_5 | HRGMv2_1753_5_133 | 148406 | 149605 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1753_5 | HRGMv2_1753_5_134 | 149598 | 150479 | + | GT2 |
| CAZyme | HRGMv2_1753_5 | HRGMv2_1753_5_135 | 150502 | 151305 | + | GT2 |
| CAZyme | HRGMv2_1753_5 | HRGMv2_1753_5_136 | 151339 | 152445 | + | GH103 |
| pfam | HRGMv2_1753_5 | HRGMv2_1753_5_137 | 152525 | 153664 | + | Cytochrom_C | CCP_MauG |
| STP | HRGMv2_1753_5 | HRGMv2_1753_5_138 | 153764 | 154879 | + | Peripla_BP_2 |
| TC | HRGMv2_1753_5 | HRGMv2_1753_5_139 | 154895 | 155944 | + | 3.A.1.14.5 |
| TC | HRGMv2_1753_5 | HRGMv2_1753_5_140 | 155944 | 156717 | + | 3.A.1.14.19 |
Gene ID: HRGMv2_1753_5_132
Type: CAZyme
Location: 147627 - 148397 (+)
Type: CAZyme
Location: 147627 - 148397 (+)
Gene ID: HRGMv2_1753_5_133
Type:
Location: 148406 - 149605 (+)
Type:
Location: 148406 - 149605 (+)
Gene ID: HRGMv2_1753_5_134
Type: CAZyme
Location: 149598 - 150479 (+)
Type: CAZyme
Location: 149598 - 150479 (+)
Gene ID: HRGMv2_1753_5_135
Type: CAZyme
Location: 150502 - 151305 (+)
Type: CAZyme
Location: 150502 - 151305 (+)
Gene ID: HRGMv2_1753_5_136
Type: CAZyme
Location: 151339 - 152445 (+)
Type: CAZyme
Location: 151339 - 152445 (+)
Gene ID: HRGMv2_1753_5_137
Type: pfam
Location: 152525 - 153664 (+)
Type: pfam
Location: 152525 - 153664 (+)
Gene ID: HRGMv2_1753_5_138
Type: STP
Location: 153764 - 154879 (+)
Type: STP
Location: 153764 - 154879 (+)
Gene ID: HRGMv2_1753_5_139
Type: TC
Location: 154895 - 155944 (+)
Type: TC
Location: 154895 - 155944 (+)
Gene ID: HRGMv2_1753_5_140
Type: TC
Location: 155944 - 156717 (+)
Type: TC
Location: 155944 - 156717 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1753_5_133 | vegetarian > vegan | 1.01767 | 0.03611 |
| HRGMv2_1753_5_138 | vegan > omnivore | 1.92625 | 0.00581 |
| HRGMv2_1753_5_138 | vegetarian > omnivore | 1.20448 | 0.01312 |