Cluster: HRGMv2_1753_CGC7
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1753_4 | HRGMv2_1753_4_1 | 3 | 1139 | + | 1.B.40.2.2 |
| CAZyme | HRGMv2_1753_4 | HRGMv2_1753_4_2 | 1295 | 2131 | + | GT8 |
| CAZyme | HRGMv2_1753_4 | HRGMv2_1753_4_3 | 2151 | 3125 | - | GT2 |
| CAZyme | HRGMv2_1753_4 | HRGMv2_1753_4_4 | 3161 | 4288 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1753_4 | HRGMv2_1753_4_5 | 4355 | 4849 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1753_4 | HRGMv2_1753_4_6 | 4876 | 6285 | - | 1.B.76.1.8 |
Gene ID: HRGMv2_1753_4_1
Type: TC
Location: 3 - 1139 (+)
Type: TC
Location: 3 - 1139 (+)
Gene ID: HRGMv2_1753_4_2
Type: CAZyme
Location: 1295 - 2131 (+)
Type: CAZyme
Location: 1295 - 2131 (+)
Gene ID: HRGMv2_1753_4_3
Type: CAZyme
Location: 2151 - 3125 (-)
Type: CAZyme
Location: 2151 - 3125 (-)
Gene ID: HRGMv2_1753_4_4
Type: CAZyme
Location: 3161 - 4288 (-)
Type: CAZyme
Location: 3161 - 4288 (-)
Gene ID: HRGMv2_1753_4_5
Type:
Location: 4355 - 4849 (-)
Type:
Location: 4355 - 4849 (-)
Gene ID: HRGMv2_1753_4_6
Type: TC
Location: 4876 - 6285 (-)
Type: TC
Location: 4876 - 6285 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.