Cluster: HRGMv2_1753_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1753_3 | HRGMv2_1753_3_110 | 116531 | 117658 | + | GH102 |
| TC | HRGMv2_1753_3 | HRGMv2_1753_3_111 | 117658 | 118419 | + | 3.A.16.1.3 |
| TC | HRGMv2_1753_3 | HRGMv2_1753_3_112 | 118588 | 119574 | + | 3.A.1.15.5 |
| pfam | HRGMv2_1753_3 | HRGMv2_1753_3_113 | 119693 | 121828 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | HRGMv2_1753_3 | HRGMv2_1753_3_114 | 121864 | 123768 | - | 2.A.37.1.2 |
Gene ID: HRGMv2_1753_3_110
Type: CAZyme
Location: 116531 - 117658 (+)
Type: CAZyme
Location: 116531 - 117658 (+)
Gene ID: HRGMv2_1753_3_111
Type: TC
Location: 117658 - 118419 (+)
Type: TC
Location: 117658 - 118419 (+)
Gene ID: HRGMv2_1753_3_112
Type: TC
Location: 118588 - 119574 (+)
Type: TC
Location: 118588 - 119574 (+)
Gene ID: HRGMv2_1753_3_113
Type: pfam
Location: 119693 - 121828 (+)
Type: pfam
Location: 119693 - 121828 (+)
Gene ID: HRGMv2_1753_3_114
Type: TC
Location: 121864 - 123768 (-)
Type: TC
Location: 121864 - 123768 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1753_3_111 | vegan > omnivore | 1.48048 | 0.00581 |
| HRGMv2_1753_3_111 | vegetarian > omnivore | 1.29571 | 0.01312 |
| HRGMv2_1753_3_112 | vegan > omnivore | 1.47920 | 0.00581 |
| HRGMv2_1753_3_113 | vegan > omnivore | 1.40782 | 0.00581 |
| HRGMv2_1753_3_113 | vegetarian > omnivore | 1.37053 | 0.01312 |