Cluster: HRGMv2_1753_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1753_3 | HRGMv2_1753_3_44 | 49298 | 50380 | + | 9.B.146.1.6 |
| pfam | HRGMv2_1753_3 | HRGMv2_1753_3_45 | 50443 | 51756 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | HRGMv2_1753_3 | HRGMv2_1753_3_46 | 51772 | 52956 | + | 2.A.103.1.1 |
| CAZyme | HRGMv2_1753_3 | HRGMv2_1753_3_47 | 52965 | 54017 | + | GT28 |
Gene ID: HRGMv2_1753_3_44
Type: TC
Location: 49298 - 50380 (+)
Type: TC
Location: 49298 - 50380 (+)
Gene ID: HRGMv2_1753_3_45
Type: pfam
Location: 50443 - 51756 (+)
Type: pfam
Location: 50443 - 51756 (+)
Gene ID: HRGMv2_1753_3_46
Type: TC
Location: 51772 - 52956 (+)
Type: TC
Location: 51772 - 52956 (+)
Gene ID: HRGMv2_1753_3_47
Type: CAZyme
Location: 52965 - 54017 (+)
Type: CAZyme
Location: 52965 - 54017 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1753_3_44 | vegetarian > omnivore | 2.15357 | 0.01312 |