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Cluster: HRGMv2_1753_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1753_2 HRGMv2_1753_2_37 30412 32877 - GT35
CAZyme HRGMv2_1753_2 HRGMv2_1753_2_38 32994 34433 - GT5
pfam HRGMv2_1753_2 HRGMv2_1753_2_39 34526 35836 - NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme HRGMv2_1753_2 HRGMv2_1753_2_40 35841 37832 - GH13_11
CAZyme HRGMv2_1753_2 HRGMv2_1753_2_41 37850 40039 - CBM48 | GH13_9
CAZyme HRGMv2_1753_2 HRGMv2_1753_2_42 40051 42141 - GH77
pfam HRGMv2_1753_2 HRGMv2_1753_2_43 42286 42726 - CxxCxxCC
pfam HRGMv2_1753_2 HRGMv2_1753_2_44 42793 44466 - tRNA-synt_1c | tRNA-synt_1c_C | tRNA-synt_1c_C2
TC HRGMv2_1753_2 HRGMv2_1753_2_45 44690 45871 + 3.A.1.122.1
TC HRGMv2_1753_2 HRGMv2_1753_2_46 45890 47821 + 3.A.1.122.12
TC HRGMv2_1753_2 HRGMv2_1753_2_47 47907 49274 + 1.B.17.3.7
pfam HRGMv2_1753_2 HRGMv2_1753_2_48 49328 49957 + His_Phos_1
TC HRGMv2_1753_2 HRGMv2_1753_2_49 50029 51141 - 3.A.1.132.3
Gene ID: HRGMv2_1753_2_37
Type: CAZyme
Location: 30412 - 32877 (-)
Gene ID: HRGMv2_1753_2_38
Type: CAZyme
Location: 32994 - 34433 (-)
Gene ID: HRGMv2_1753_2_39
Type: pfam
Location: 34526 - 35836 (-)
Gene ID: HRGMv2_1753_2_40
Type: CAZyme
Location: 35841 - 37832 (-)
Gene ID: HRGMv2_1753_2_41
Type: CAZyme
Location: 37850 - 40039 (-)
Gene ID: HRGMv2_1753_2_42
Type: CAZyme
Location: 40051 - 42141 (-)
Gene ID: HRGMv2_1753_2_43
Type: pfam
Location: 42286 - 42726 (-)
Gene ID: HRGMv2_1753_2_44
Type: pfam
Location: 42793 - 44466 (-)
Gene ID: HRGMv2_1753_2_45
Type: TC
Location: 44690 - 45871 (+)
Gene ID: HRGMv2_1753_2_46
Type: TC
Location: 45890 - 47821 (+)
Gene ID: HRGMv2_1753_2_47
Type: TC
Location: 47907 - 49274 (+)
Gene ID: HRGMv2_1753_2_48
Type: pfam
Location: 49328 - 49957 (+)
Gene ID: HRGMv2_1753_2_49
Type: TC
Location: 50029 - 51141 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1753_2_49 vegan > omnivore 1.21591 0.00581

🧭 Explore Read Mapping of CGC

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