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Cluster: HRGMv2_1753_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1753_15 HRGMv2_1753_15_6 4125 4430 + 9.B.21.2.1
TC HRGMv2_1753_15 HRGMv2_1753_15_7 4430 6295 + 2.A.16.2.2
pfam HRGMv2_1753_15 HRGMv2_1753_15_8 6338 7879 - PFL-like | YjjI-like
TC HRGMv2_1753_15 HRGMv2_1753_15_9 8070 8735 + 2.A.115.2.7
CAZyme HRGMv2_1753_15 HRGMv2_1753_15_10 8685 9713 - GT9
pfam HRGMv2_1753_15 HRGMv2_1753_15_11 9713 10957 - Wzy_C
TC HRGMv2_1753_15 HRGMv2_1753_15_12 11215 12576 - 9.B.24.1.5
Gene ID: HRGMv2_1753_15_6
Type: TC
Location: 4125 - 4430 (+)
Gene ID: HRGMv2_1753_15_7
Type: TC
Location: 4430 - 6295 (+)
Gene ID: HRGMv2_1753_15_8
Type: pfam
Location: 6338 - 7879 (-)
Gene ID: HRGMv2_1753_15_9
Type: TC
Location: 8070 - 8735 (+)
Gene ID: HRGMv2_1753_15_10
Type: CAZyme
Location: 8685 - 9713 (-)
Gene ID: HRGMv2_1753_15_11
Type: pfam
Location: 9713 - 10957 (-)
Gene ID: HRGMv2_1753_15_12
Type: TC
Location: 11215 - 12576 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1753_15_9 vegan > omnivore 1.33421 0.00581
HRGMv2_1753_15_9 vegetarian > omnivore 1.62710 0.01312
HRGMv2_1753_15_10 vegan > omnivore 1.17045 0.00581
HRGMv2_1753_15_11 vegan > omnivore 1.10531 0.00581
HRGMv2_1753_15_11 vegetarian > omnivore 1.14681 0.01312

🧭 Explore Read Mapping of CGC

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