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Cluster: HRGMv2_1753_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1753_11 HRGMv2_1753_11_45 51217 52707 + 2.A.21.2.3
pfam HRGMv2_1753_11 HRGMv2_1753_11_46 52762 53106 - rve_2 | rve_3
pfam HRGMv2_1753_11 HRGMv2_1753_11_47 53180 54046 - HSP33
TC HRGMv2_1753_11 HRGMv2_1753_11_48 54245 55324 - 1.B.1.3.3
CAZyme HRGMv2_1753_11 HRGMv2_1753_11_49 55486 56439 - GT9
TC HRGMv2_1753_11 HRGMv2_1753_11_50 56436 57341 - 2.A.7.3.58
NULL(UNKNOWN) HRGMv2_1753_11 HRGMv2_1753_11_51 57370 57951 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1753_11 HRGMv2_1753_11_52 57969 59012 - GT9
Gene ID: HRGMv2_1753_11_45
Type: TC
Location: 51217 - 52707 (+)
Gene ID: HRGMv2_1753_11_46
Type: pfam
Location: 52762 - 53106 (-)
Gene ID: HRGMv2_1753_11_47
Type: pfam
Location: 53180 - 54046 (-)
Gene ID: HRGMv2_1753_11_48
Type: TC
Location: 54245 - 55324 (-)
Gene ID: HRGMv2_1753_11_49
Type: CAZyme
Location: 55486 - 56439 (-)
Gene ID: HRGMv2_1753_11_50
Type: TC
Location: 56436 - 57341 (-)
Gene ID: HRGMv2_1753_11_51
Type:
Location: 57370 - 57951 (-)
Gene ID: HRGMv2_1753_11_52
Type: CAZyme
Location: 57969 - 59012 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1753_11_48 vegetarian > omnivore 1.66558 0.01312
HRGMv2_1753_11_48 vegetarian > vegan 1.13859 0.03611

🧭 Explore Read Mapping of CGC

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