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Cluster: HRGMv2_1753_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1753_11 HRGMv2_1753_11_33 34294 35184 + 3.A.1.14.1
TC HRGMv2_1753_11 HRGMv2_1753_11_34 35184 36173 + 3.A.1.14.1
TC HRGMv2_1753_11 HRGMv2_1753_11_35 36173 37156 + 3.A.1.14.1
TC HRGMv2_1753_11 HRGMv2_1753_11_36 37156 37923 + 3.A.1.14.8
TC HRGMv2_1753_11 HRGMv2_1753_11_37 38134 40554 + 1.B.55.1.3
CAZyme HRGMv2_1753_11 HRGMv2_1753_11_38 40576 42492 + CE4 | GH153
CAZyme HRGMv2_1753_11 HRGMv2_1753_11_39 42502 43743 + GT2
Gene ID: HRGMv2_1753_11_33
Type: TC
Location: 34294 - 35184 (+)
Gene ID: HRGMv2_1753_11_34
Type: TC
Location: 35184 - 36173 (+)
Gene ID: HRGMv2_1753_11_35
Type: TC
Location: 36173 - 37156 (+)
Gene ID: HRGMv2_1753_11_36
Type: TC
Location: 37156 - 37923 (+)
Gene ID: HRGMv2_1753_11_37
Type: TC
Location: 38134 - 40554 (+)
Gene ID: HRGMv2_1753_11_38
Type: CAZyme
Location: 40576 - 42492 (+)
Gene ID: HRGMv2_1753_11_39
Type: CAZyme
Location: 42502 - 43743 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1753_11_33 vegetarian > omnivore 1.40632 0.01312
HRGMv2_1753_11_34 vegetarian > omnivore 2.19688 0.01312

🧭 Explore Read Mapping of CGC

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