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Cluster: HRGMv2_1753_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1753_1 HRGMv2_1753_1_158 162378 163421 + GH3
pfam HRGMv2_1753_1 HRGMv2_1753_1_159 163418 164590 + MTS | tRNA_U5-meth_tr | Methyltransf_31
TC HRGMv2_1753_1 HRGMv2_1753_1_160 164624 165457 - 3.A.1.15.4
TC HRGMv2_1753_1 HRGMv2_1753_1_161 165450 166301 - 3.A.1.15.4
TC HRGMv2_1753_1 HRGMv2_1753_1_162 166305 167201 - 3.A.1.15.4
TC HRGMv2_1753_1 HRGMv2_1753_1_163 167201 168082 - 3.A.1.15.4
Gene ID: HRGMv2_1753_1_158
Type: CAZyme
Location: 162378 - 163421 (+)
Gene ID: HRGMv2_1753_1_159
Type: pfam
Location: 163418 - 164590 (+)
Gene ID: HRGMv2_1753_1_160
Type: TC
Location: 164624 - 165457 (-)
Gene ID: HRGMv2_1753_1_161
Type: TC
Location: 165450 - 166301 (-)
Gene ID: HRGMv2_1753_1_162
Type: TC
Location: 166305 - 167201 (-)
Gene ID: HRGMv2_1753_1_163
Type: TC
Location: 167201 - 168082 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1753_1_159 vegan > omnivore 1.17508 0.00581
HRGMv2_1753_1_159 vegetarian > omnivore 1.21914 0.01312
HRGMv2_1753_1_160 vegan > omnivore 2.41170 0.00581
HRGMv2_1753_1_160 vegetarian > omnivore 1.40790 0.01312
HRGMv2_1753_1_161 vegan > omnivore 2.54979 0.00581
HRGMv2_1753_1_161 vegetarian > omnivore 1.34061 0.01312

🧭 Explore Read Mapping of CGC

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