Cluster: HRGMv2_1753_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1753_10 | HRGMv2_1753_10_4 | 3031 | 3846 | + | GT2 |
| TC | HRGMv2_1753_10 | HRGMv2_1753_10_5 | 3843 | 5219 | + | 2.A.38.1.1 |
| TC | HRGMv2_1753_10 | HRGMv2_1753_10_6 | 5298 | 5681 | + | 1.A.22.1.1 |
Gene ID: HRGMv2_1753_10_4
Type: CAZyme
Location: 3031 - 3846 (+)
Type: CAZyme
Location: 3031 - 3846 (+)
Gene ID: HRGMv2_1753_10_5
Type: TC
Location: 3843 - 5219 (+)
Type: TC
Location: 3843 - 5219 (+)
Gene ID: HRGMv2_1753_10_6
Type: TC
Location: 5298 - 5681 (+)
Type: TC
Location: 5298 - 5681 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1753_10_4 | vegan > omnivore | 1.83262 | 0.00581 |
| HRGMv2_1753_10_4 | vegetarian > omnivore | 1.04145 | 0.01312 |
| HRGMv2_1753_10_5 | vegetarian > omnivore | 1.33364 | 0.00460 |
| HRGMv2_1753_10_6 | vegan > omnivore | 1.88097 | 0.00581 |
| HRGMv2_1753_10_6 | vegetarian > omnivore | 3.93293 | 0.01312 |