Cluster: HRGMv2_1753_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1753_9 | HRGMv2_1753_9_103 | 113288 | 114232 | + | 2.A.16.1.2 |
| TF | HRGMv2_1753_9 | HRGMv2_1753_9_104 | 114311 | 115024 | - | GntR |
| CAZyme | HRGMv2_1753_9 | HRGMv2_1753_9_105 | 115220 | 118993 | + | GH77 | GT35 |
| pfam | HRGMv2_1753_9 | HRGMv2_1753_9_106 | 119004 | 119795 | + | Exo_endo_phos |
| TC | HRGMv2_1753_9 | HRGMv2_1753_9_107 | 119806 | 121470 | + | 4.A.1.1.11 |
Gene ID: HRGMv2_1753_9_103
Type: TC
Location: 113288 - 114232 (+)
Type: TC
Location: 113288 - 114232 (+)
Gene ID: HRGMv2_1753_9_104
Type: TF
Location: 114311 - 115024 (-)
Type: TF
Location: 114311 - 115024 (-)
Gene ID: HRGMv2_1753_9_105
Type: CAZyme
Location: 115220 - 118993 (+)
Type: CAZyme
Location: 115220 - 118993 (+)
Gene ID: HRGMv2_1753_9_106
Type: pfam
Location: 119004 - 119795 (+)
Type: pfam
Location: 119004 - 119795 (+)
Gene ID: HRGMv2_1753_9_107
Type: TC
Location: 119806 - 121470 (+)
Type: TC
Location: 119806 - 121470 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1753_9_107 | vegan > omnivore | 1.33336 | 0.00581 |