Cluster: HRGMv2_1753_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1753_9 | HRGMv2_1753_9_8 | 10232 | 10489 | + | 8.A.8.1.1 |
| TC | HRGMv2_1753_9 | HRGMv2_1753_9_9 | 10568 | 12295 | + | 8.A.7.1.1 |
| TC | HRGMv2_1753_9 | HRGMv2_1753_9_10 | 12355 | 12855 | + | 4.A.1.1.1 |
| pfam | HRGMv2_1753_9 | HRGMv2_1753_9_11 | 12929 | 14128 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | HRGMv2_1753_9 | HRGMv2_1753_9_12 | 14250 | 17276 | + | GH2 |
Gene ID: HRGMv2_1753_9_8
Type: TC
Location: 10232 - 10489 (+)
Type: TC
Location: 10232 - 10489 (+)
Gene ID: HRGMv2_1753_9_9
Type: TC
Location: 10568 - 12295 (+)
Type: TC
Location: 10568 - 12295 (+)
Gene ID: HRGMv2_1753_9_10
Type: TC
Location: 12355 - 12855 (+)
Type: TC
Location: 12355 - 12855 (+)
Gene ID: HRGMv2_1753_9_11
Type: pfam
Location: 12929 - 14128 (+)
Type: pfam
Location: 12929 - 14128 (+)
Gene ID: HRGMv2_1753_9_12
Type: CAZyme
Location: 14250 - 17276 (+)
Type: CAZyme
Location: 14250 - 17276 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1753_9_10 | vegan > omnivore | 4.34647 | 0.00581 |
| HRGMv2_1753_9_10 | vegetarian > omnivore | 1.45774 | 0.01312 |