Cluster: HRGMv2_1753_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1753
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1753_7 | HRGMv2_1753_7_36 | 32625 | 34469 | - | 3.A.1.106.2 |
| TF | HRGMv2_1753_7 | HRGMv2_1753_7_37 | 34546 | 35436 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_1753_7 | HRGMv2_1753_7_38 | 35540 | 35884 | + | CMD |
| CAZyme | HRGMv2_1753_7 | HRGMv2_1753_7_39 | 35957 | 37012 | - | GT9 |
Gene ID: HRGMv2_1753_7_36
Type: TC
Location: 32625 - 34469 (-)
Type: TC
Location: 32625 - 34469 (-)
Gene ID: HRGMv2_1753_7_37
Type: TF
Location: 34546 - 35436 (-)
Type: TF
Location: 34546 - 35436 (-)
Gene ID: HRGMv2_1753_7_38
Type: pfam
Location: 35540 - 35884 (+)
Type: pfam
Location: 35540 - 35884 (+)
Gene ID: HRGMv2_1753_7_39
Type: CAZyme
Location: 35957 - 37012 (-)
Type: CAZyme
Location: 35957 - 37012 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp014931275
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1753_7_36 | vegetarian > omnivore | 1.33966 | 0.01312 |
| HRGMv2_1753_7_37 | vegetarian > vegan | 1.12923 | 0.03611 |
| HRGMv2_1753_7_38 | vegan > omnivore | 1.21269 | 0.00581 |
| HRGMv2_1753_7_38 | vegetarian > omnivore | 1.25859 | 0.01312 |
| HRGMv2_1753_7_39 | vegetarian > omnivore | 1.54057 | 0.01312 |
| HRGMv2_1753_7_39 | vegetarian > vegan | 1.19003 | 0.03611 |