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Cluster: HRGMv2_1753_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1753_6 HRGMv2_1753_6_81 81646 83055 + 2.A.1.3.51
TC HRGMv2_1753_6 HRGMv2_1753_6_82 83225 84871 + 3.A.1.5.27
pfam HRGMv2_1753_6 HRGMv2_1753_6_83 84938 85570 + PNPOx_N | PNP_phzG_C | Pyridox_oxase_2
NULL(UNKNOWN) HRGMv2_1753_6 HRGMv2_1753_6_84 85847 86527 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1753_6 HRGMv2_1753_6_85 86668 87774 - GH177
pfam HRGMv2_1753_6 HRGMv2_1753_6_86 87785 88858 - GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
TF HRGMv2_1753_6 HRGMv2_1753_6_87 88848 89558 - GntR
TC HRGMv2_1753_6 HRGMv2_1753_6_88 89733 90959 + 2.A.1.12.1
TC HRGMv2_1753_6 HRGMv2_1753_6_89 91115 92500 + 2.A.47.5.2
Gene ID: HRGMv2_1753_6_81
Type: TC
Location: 81646 - 83055 (+)
Gene ID: HRGMv2_1753_6_82
Type: TC
Location: 83225 - 84871 (+)
Gene ID: HRGMv2_1753_6_83
Type: pfam
Location: 84938 - 85570 (+)
Gene ID: HRGMv2_1753_6_84
Type:
Location: 85847 - 86527 (-)
Gene ID: HRGMv2_1753_6_85
Type: CAZyme
Location: 86668 - 87774 (-)
Gene ID: HRGMv2_1753_6_86
Type: pfam
Location: 87785 - 88858 (-)
Gene ID: HRGMv2_1753_6_87
Type: TF
Location: 88848 - 89558 (-)
Gene ID: HRGMv2_1753_6_88
Type: TC
Location: 89733 - 90959 (+)
Gene ID: HRGMv2_1753_6_89
Type: TC
Location: 91115 - 92500 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1753_6_82 vegan > omnivore 1.12703 0.00581
HRGMv2_1753_6_83 vegetarian > omnivore 1.11136 0.01312

🧭 Explore Read Mapping of CGC

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