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Cluster: HRGMv2_1753_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1753_1 HRGMv2_1753_1_10 8862 10232 + 2.A.25.1.4
pfam HRGMv2_1753_1 HRGMv2_1753_1_11 10474 10797 + Ribosomal_S30AE
TC HRGMv2_1753_1 HRGMv2_1753_1_12 10859 13153 - 1.B.14.2.1
pfam HRGMv2_1753_1 HRGMv2_1753_1_13 13302 14300 + TbpB_B_D
NULL(UNKNOWN) HRGMv2_1753_1 HRGMv2_1753_1_14 14349 14492 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_1753_1 HRGMv2_1753_1_15 14549 15943 - GH23
TC HRGMv2_1753_1 HRGMv2_1753_1_16 16039 17889 - 3.A.18.1.1
Gene ID: HRGMv2_1753_1_10
Type: TC
Location: 8862 - 10232 (+)
Gene ID: HRGMv2_1753_1_11
Type: pfam
Location: 10474 - 10797 (+)
Gene ID: HRGMv2_1753_1_12
Type: TC
Location: 10859 - 13153 (-)
Gene ID: HRGMv2_1753_1_13
Type: pfam
Location: 13302 - 14300 (+)
Gene ID: HRGMv2_1753_1_14
Type:
Location: 14349 - 14492 (-)
Gene ID: HRGMv2_1753_1_15
Type: CAZyme
Location: 14549 - 15943 (-)
Gene ID: HRGMv2_1753_1_16
Type: TC
Location: 16039 - 17889 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1753_1_14 vegetarian > omnivore 1.85812 0.01312
HRGMv2_1753_1_15 vegetarian > omnivore 1.44930 0.01312

🧭 Explore Read Mapping of CGC

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