dbCAN Logo

Cluster: HRGMv2_1752_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1752_4 HRGMv2_1752_4_116 131022 132431 + 2.A.1.3.51
TC HRGMv2_1752_4 HRGMv2_1752_4_117 132565 134211 + 3.A.1.5.27
pfam HRGMv2_1752_4 HRGMv2_1752_4_118 134278 134910 + PNPOx_N | PNP_phzG_C | Pyridox_oxase_2
CAZyme HRGMv2_1752_4 HRGMv2_1752_4_119 134987 136093 - GH177
pfam HRGMv2_1752_4 HRGMv2_1752_4_120 136104 137177 - GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
TF HRGMv2_1752_4 HRGMv2_1752_4_121 137167 137877 - GntR
TC HRGMv2_1752_4 HRGMv2_1752_4_122 138052 139278 + 2.A.1.12.1
TC HRGMv2_1752_4 HRGMv2_1752_4_123 139434 140819 + 2.A.47.5.2
Gene ID: HRGMv2_1752_4_116
Type: TC
Location: 131022 - 132431 (+)
Gene ID: HRGMv2_1752_4_117
Type: TC
Location: 132565 - 134211 (+)
Gene ID: HRGMv2_1752_4_118
Type: pfam
Location: 134278 - 134910 (+)
Gene ID: HRGMv2_1752_4_119
Type: CAZyme
Location: 134987 - 136093 (-)
Gene ID: HRGMv2_1752_4_120
Type: pfam
Location: 136104 - 137177 (-)
Gene ID: HRGMv2_1752_4_121
Type: TF
Location: 137167 - 137877 (-)
Gene ID: HRGMv2_1752_4_122
Type: TC
Location: 138052 - 139278 (+)
Gene ID: HRGMv2_1752_4_123
Type: TC
Location: 139434 - 140819 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1752_4_117 vegan > omnivore 1.18302 0.00732

🧭 Explore Read Mapping of CGC

← Back to Cluster List