Cluster: HRGMv2_1752_CGC8
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1752_4 | HRGMv2_1752_4_56 | 67950 | 69968 | - | GT41 |
| pfam | HRGMv2_1752_4 | HRGMv2_1752_4_57 | 70003 | 71340 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | HRGMv2_1752_4 | HRGMv2_1752_4_58 | 71506 | 72222 | + | 9.B.20.2.2 |
Gene ID: HRGMv2_1752_4_56
Type: CAZyme
Location: 67950 - 69968 (-)
Type: CAZyme
Location: 67950 - 69968 (-)
Gene ID: HRGMv2_1752_4_57
Type: pfam
Location: 70003 - 71340 (-)
Type: pfam
Location: 70003 - 71340 (-)
Gene ID: HRGMv2_1752_4_58
Type: TC
Location: 71506 - 72222 (+)
Type: TC
Location: 71506 - 72222 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_4_58 | vegetarian > omnivore | 1.27214 | 0.01021 |