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Cluster: HRGMv2_1752_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1752_2 HRGMv2_1752_2_103 81442 82683 - GT2
CAZyme HRGMv2_1752_2 HRGMv2_1752_2_104 82693 84609 - CE4 | GH153
TC HRGMv2_1752_2 HRGMv2_1752_2_105 84637 87054 - 1.B.55.1.3
TC HRGMv2_1752_2 HRGMv2_1752_2_106 87244 88011 - 3.A.1.14.8
TC HRGMv2_1752_2 HRGMv2_1752_2_107 88011 88994 - 3.A.1.14.1
TC HRGMv2_1752_2 HRGMv2_1752_2_108 88994 89983 - 3.A.1.14.1
TC HRGMv2_1752_2 HRGMv2_1752_2_109 89983 90873 - 3.A.1.14.1
Gene ID: HRGMv2_1752_2_103
Type: CAZyme
Location: 81442 - 82683 (-)
Gene ID: HRGMv2_1752_2_104
Type: CAZyme
Location: 82693 - 84609 (-)
Gene ID: HRGMv2_1752_2_105
Type: TC
Location: 84637 - 87054 (-)
Gene ID: HRGMv2_1752_2_106
Type: TC
Location: 87244 - 88011 (-)
Gene ID: HRGMv2_1752_2_107
Type: TC
Location: 88011 - 88994 (-)
Gene ID: HRGMv2_1752_2_108
Type: TC
Location: 88994 - 89983 (-)
Gene ID: HRGMv2_1752_2_109
Type: TC
Location: 89983 - 90873 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1752_2_108 vegetarian > omnivore 1.37578 0.01021
HRGMv2_1752_2_109 vegetarian > omnivore 1.44937 0.01021

🧭 Explore Read Mapping of CGC

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