Cluster: HRGMv2_1752_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1752_2 | HRGMv2_1752_2_94 | 72411 | 73454 | + | GT9 |
| NULL(UNKNOWN) | HRGMv2_1752_2 | HRGMv2_1752_2_95 | 73472 | 74056 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_1752_2 | HRGMv2_1752_2_96 | 74086 | 74991 | + | 2.A.7.3.58 |
| CAZyme | HRGMv2_1752_2 | HRGMv2_1752_2_97 | 74988 | 75941 | + | GT9 |
| TC | HRGMv2_1752_2 | HRGMv2_1752_2_98 | 76105 | 77229 | + | 1.B.1.3.3 |
Gene ID: HRGMv2_1752_2_94
Type: CAZyme
Location: 72411 - 73454 (+)
Type: CAZyme
Location: 72411 - 73454 (+)
Gene ID: HRGMv2_1752_2_95
Type:
Location: 73472 - 74056 (+)
Type:
Location: 73472 - 74056 (+)
Gene ID: HRGMv2_1752_2_96
Type: TC
Location: 74086 - 74991 (+)
Type: TC
Location: 74086 - 74991 (+)
Gene ID: HRGMv2_1752_2_97
Type: CAZyme
Location: 74988 - 75941 (+)
Type: CAZyme
Location: 74988 - 75941 (+)
Gene ID: HRGMv2_1752_2_98
Type: TC
Location: 76105 - 77229 (+)
Type: TC
Location: 76105 - 77229 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_2_97 | vegan > omnivore | 1.16693 | 0.00732 |
| HRGMv2_1752_2_97 | vegetarian > omnivore | 1.62057 | 0.01021 |