Cluster: HRGMv2_1752_CGC3
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1752_2 | HRGMv2_1752_2_4 | 3003 | 3818 | + | GT2 |
| TC | HRGMv2_1752_2 | HRGMv2_1752_2_5 | 3815 | 5191 | + | 2.A.38.1.1 |
| TC | HRGMv2_1752_2 | HRGMv2_1752_2_6 | 5270 | 5656 | + | 1.A.22.1.1 |
Gene ID: HRGMv2_1752_2_4
Type: CAZyme
Location: 3003 - 3818 (+)
Type: CAZyme
Location: 3003 - 3818 (+)
Gene ID: HRGMv2_1752_2_5
Type: TC
Location: 3815 - 5191 (+)
Type: TC
Location: 3815 - 5191 (+)
Gene ID: HRGMv2_1752_2_6
Type: TC
Location: 5270 - 5656 (+)
Type: TC
Location: 5270 - 5656 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_2_4 | vegan > omnivore | 1.47985 | 0.00732 |
| HRGMv2_1752_2_4 | vegetarian > omnivore | 1.00614 | 0.01021 |
| HRGMv2_1752_2_5 | vegetarian > omnivore | 1.32153 | 0.00878 |
| HRGMv2_1752_2_6 | vegan > omnivore | 1.57727 | 0.00732 |
| HRGMv2_1752_2_6 | vegetarian > omnivore | 2.80055 | 0.01021 |