Cluster: HRGMv2_1752_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1752_19 | HRGMv2_1752_19_7 | 5747 | 6874 | + | GH102 |
| TC | HRGMv2_1752_19 | HRGMv2_1752_19_8 | 6874 | 7635 | + | 3.A.16.1.3 |
| TC | HRGMv2_1752_19 | HRGMv2_1752_19_9 | 7803 | 8783 | + | 3.A.1.15.5 |
| pfam | HRGMv2_1752_19 | HRGMv2_1752_19_10 | 9075 | 11210 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | HRGMv2_1752_19 | HRGMv2_1752_19_11 | 11244 | 13148 | - | 2.A.37.1.2 |
Gene ID: HRGMv2_1752_19_7
Type: CAZyme
Location: 5747 - 6874 (+)
Type: CAZyme
Location: 5747 - 6874 (+)
Gene ID: HRGMv2_1752_19_8
Type: TC
Location: 6874 - 7635 (+)
Type: TC
Location: 6874 - 7635 (+)
Gene ID: HRGMv2_1752_19_9
Type: TC
Location: 7803 - 8783 (+)
Type: TC
Location: 7803 - 8783 (+)
Gene ID: HRGMv2_1752_19_10
Type: pfam
Location: 9075 - 11210 (+)
Type: pfam
Location: 9075 - 11210 (+)
Gene ID: HRGMv2_1752_19_11
Type: TC
Location: 11244 - 13148 (-)
Type: TC
Location: 11244 - 13148 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_19_7 | vegetarian > omnivore | 1.20838 | 0.01021 |
| HRGMv2_1752_19_8 | vegan > omnivore | 1.40455 | 0.00732 |
| HRGMv2_1752_19_8 | vegetarian > omnivore | 1.59263 | 0.01021 |
| HRGMv2_1752_19_10 | vegan > omnivore | 1.36152 | 0.00732 |
| HRGMv2_1752_19_10 | vegetarian > omnivore | 1.39300 | 0.01021 |
| HRGMv2_1752_19_11 | vegetarian > omnivore | 1.03520 | 0.01021 |