Cluster: HRGMv2_1752_CGC2
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1752_1 | HRGMv2_1752_1_241 | 254351 | 255595 | - | 2.A.1.20.4 |
| pfam | HRGMv2_1752_1 | HRGMv2_1752_1_242 | 255601 | 256218 | - | Y_phosphatase | DSPc | Y_phosphatase2 | Y_phosphatase3 | PTP-NADK | Tc-R-P |
| CAZyme | HRGMv2_1752_1 | HRGMv2_1752_1_243 | 256228 | 257682 | - | GH32 |
Gene ID: HRGMv2_1752_1_241
Type: TC
Location: 254351 - 255595 (-)
Type: TC
Location: 254351 - 255595 (-)
Gene ID: HRGMv2_1752_1_242
Type: pfam
Location: 255601 - 256218 (-)
Type: pfam
Location: 255601 - 256218 (-)
Gene ID: HRGMv2_1752_1_243
Type: CAZyme
Location: 256228 - 257682 (-)
Type: CAZyme
Location: 256228 - 257682 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_1_243 | vegan > omnivore | 1.10420 | 0.00732 |