Cluster: HRGMv2_1752_CGC19
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1752_16 | HRGMv2_1752_16_19 | 19968 | 20741 | - | 3.A.1.14.19 |
| TC | HRGMv2_1752_16 | HRGMv2_1752_16_20 | 20741 | 21790 | - | 3.A.1.14.5 |
| STP | HRGMv2_1752_16 | HRGMv2_1752_16_21 | 21806 | 22921 | - | Peripla_BP_2 |
| pfam | HRGMv2_1752_16 | HRGMv2_1752_16_22 | 23019 | 24158 | - | Cytochrom_C | CCP_MauG |
| CAZyme | HRGMv2_1752_16 | HRGMv2_1752_16_23 | 24238 | 25356 | - | GH103 |
| CAZyme | HRGMv2_1752_16 | HRGMv2_1752_16_24 | 25390 | 26193 | - | GT2 |
| CAZyme | HRGMv2_1752_16 | HRGMv2_1752_16_25 | 26216 | 27097 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1752_16 | HRGMv2_1752_16_26 | 27090 | 28289 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1752_16 | HRGMv2_1752_16_27 | 28297 | 29067 | - | GT25 |
Gene ID: HRGMv2_1752_16_19
Type: TC
Location: 19968 - 20741 (-)
Type: TC
Location: 19968 - 20741 (-)
Gene ID: HRGMv2_1752_16_20
Type: TC
Location: 20741 - 21790 (-)
Type: TC
Location: 20741 - 21790 (-)
Gene ID: HRGMv2_1752_16_21
Type: STP
Location: 21806 - 22921 (-)
Type: STP
Location: 21806 - 22921 (-)
Gene ID: HRGMv2_1752_16_22
Type: pfam
Location: 23019 - 24158 (-)
Type: pfam
Location: 23019 - 24158 (-)
Gene ID: HRGMv2_1752_16_23
Type: CAZyme
Location: 24238 - 25356 (-)
Type: CAZyme
Location: 24238 - 25356 (-)
Gene ID: HRGMv2_1752_16_24
Type: CAZyme
Location: 25390 - 26193 (-)
Type: CAZyme
Location: 25390 - 26193 (-)
Gene ID: HRGMv2_1752_16_25
Type: CAZyme
Location: 26216 - 27097 (-)
Type: CAZyme
Location: 26216 - 27097 (-)
Gene ID: HRGMv2_1752_16_26
Type:
Location: 27090 - 28289 (-)
Type:
Location: 27090 - 28289 (-)
Gene ID: HRGMv2_1752_16_27
Type: CAZyme
Location: 28297 - 29067 (-)
Type: CAZyme
Location: 28297 - 29067 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_16_21 | vegan > omnivore | 1.63056 | 0.00732 |
| HRGMv2_1752_16_21 | vegetarian > omnivore | 1.10926 | 0.01021 |
| HRGMv2_1752_16_25 | vegetarian > omnivore | 2.03722 | 0.01021 |