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Cluster: HRGMv2_1752_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1752_16 HRGMv2_1752_16_7 7349 9748 + GT51
TC HRGMv2_1752_16 HRGMv2_1752_16_8 9967 11871 + 2.A.108.2.10
TC HRGMv2_1752_16 HRGMv2_1752_16_9 11900 12421 + 2.A.108.2.10
pfam HRGMv2_1752_16 HRGMv2_1752_16_10 12537 13931 + YHS | FtrD-like
TC HRGMv2_1752_16 HRGMv2_1752_16_11 13931 15271 + 3.A.1.122.8
pfam HRGMv2_1752_16 HRGMv2_1752_16_12 15258 16391 + FtsX | MacB_PCD
TC HRGMv2_1752_16 HRGMv2_1752_16_13 16393 17064 + 3.A.1.122.8
Gene ID: HRGMv2_1752_16_7
Type: CAZyme
Location: 7349 - 9748 (+)
Gene ID: HRGMv2_1752_16_8
Type: TC
Location: 9967 - 11871 (+)
Gene ID: HRGMv2_1752_16_9
Type: TC
Location: 11900 - 12421 (+)
Gene ID: HRGMv2_1752_16_10
Type: pfam
Location: 12537 - 13931 (+)
Gene ID: HRGMv2_1752_16_11
Type: TC
Location: 13931 - 15271 (+)
Gene ID: HRGMv2_1752_16_12
Type: pfam
Location: 15258 - 16391 (+)
Gene ID: HRGMv2_1752_16_13
Type: TC
Location: 16393 - 17064 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1752_16_8 vegetarian > vegan 1.18083 0.04288
HRGMv2_1752_16_10 vegetarian > vegan 1.75931 0.04288

🧭 Explore Read Mapping of CGC

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