Cluster: HRGMv2_1752_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1752_12 | HRGMv2_1752_12_13 | 11094 | 12464 | + | 2.A.25.1.4 |
| pfam | HRGMv2_1752_12 | HRGMv2_1752_12_14 | 12705 | 13028 | + | Ribosomal_S30AE |
| NULL(UNKNOWN) | HRGMv2_1752_12 | HRGMv2_1752_12_15 | 13075 | 13218 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1752_12 | HRGMv2_1752_12_16 | 13274 | 14668 | - | GH23 |
| TC | HRGMv2_1752_12 | HRGMv2_1752_12_17 | 14764 | 16602 | - | 3.A.18.1.1 |
Gene ID: HRGMv2_1752_12_13
Type: TC
Location: 11094 - 12464 (+)
Type: TC
Location: 11094 - 12464 (+)
Gene ID: HRGMv2_1752_12_14
Type: pfam
Location: 12705 - 13028 (+)
Type: pfam
Location: 12705 - 13028 (+)
Gene ID: HRGMv2_1752_12_15
Type:
Location: 13075 - 13218 (-)
Type:
Location: 13075 - 13218 (-)
Gene ID: HRGMv2_1752_12_16
Type: CAZyme
Location: 13274 - 14668 (-)
Type: CAZyme
Location: 13274 - 14668 (-)
Gene ID: HRGMv2_1752_12_17
Type: TC
Location: 14764 - 16602 (-)
Type: TC
Location: 14764 - 16602 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_12_15 | vegetarian > omnivore | 1.48895 | 0.01021 |
| HRGMv2_1752_12_16 | vegetarian > omnivore | 1.57380 | 0.01021 |