Cluster: HRGMv2_1752_CGC16
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1752_11 | HRGMv2_1752_11_79 | 71858 | 72886 | + | GT9 |
| TC | HRGMv2_1752_11 | HRGMv2_1752_11_80 | 72836 | 73501 | - | 2.A.115.2.7 |
| pfam | HRGMv2_1752_11 | HRGMv2_1752_11_81 | 73692 | 75233 | + | PFL-like | YjjI-like |
| TC | HRGMv2_1752_11 | HRGMv2_1752_11_82 | 75275 | 77140 | - | 2.A.16.2.2 |
| TC | HRGMv2_1752_11 | HRGMv2_1752_11_83 | 77140 | 77445 | - | 9.B.21.2.1 |
Gene ID: HRGMv2_1752_11_79
Type: CAZyme
Location: 71858 - 72886 (+)
Type: CAZyme
Location: 71858 - 72886 (+)
Gene ID: HRGMv2_1752_11_80
Type: TC
Location: 72836 - 73501 (-)
Type: TC
Location: 72836 - 73501 (-)
Gene ID: HRGMv2_1752_11_81
Type: pfam
Location: 73692 - 75233 (+)
Type: pfam
Location: 73692 - 75233 (+)
Gene ID: HRGMv2_1752_11_82
Type: TC
Location: 75275 - 77140 (-)
Type: TC
Location: 75275 - 77140 (-)
Gene ID: HRGMv2_1752_11_83
Type: TC
Location: 77140 - 77445 (-)
Type: TC
Location: 77140 - 77445 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_11_79 | vegan > omnivore | 1.50286 | 0.00732 |
| HRGMv2_1752_11_79 | vegetarian > omnivore | 1.17329 | 0.01021 |
| HRGMv2_1752_11_80 | vegan > omnivore | 1.21053 | 0.00732 |
| HRGMv2_1752_11_80 | vegetarian > omnivore | 1.08668 | 0.01021 |