Cluster: HRGMv2_1752_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1752_10 | HRGMv2_1752_10_8 | 10205 | 10462 | + | 8.A.8.1.1 |
| TC | HRGMv2_1752_10 | HRGMv2_1752_10_9 | 10542 | 12269 | + | 8.A.7.1.1 |
| TC | HRGMv2_1752_10 | HRGMv2_1752_10_10 | 12329 | 12829 | + | 4.A.1.1.1 |
| pfam | HRGMv2_1752_10 | HRGMv2_1752_10_11 | 12903 | 14102 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | HRGMv2_1752_10 | HRGMv2_1752_10_12 | 14224 | 17250 | + | GH2 |
Gene ID: HRGMv2_1752_10_8
Type: TC
Location: 10205 - 10462 (+)
Type: TC
Location: 10205 - 10462 (+)
Gene ID: HRGMv2_1752_10_9
Type: TC
Location: 10542 - 12269 (+)
Type: TC
Location: 10542 - 12269 (+)
Gene ID: HRGMv2_1752_10_10
Type: TC
Location: 12329 - 12829 (+)
Type: TC
Location: 12329 - 12829 (+)
Gene ID: HRGMv2_1752_10_11
Type: pfam
Location: 12903 - 14102 (+)
Type: pfam
Location: 12903 - 14102 (+)
Gene ID: HRGMv2_1752_10_12
Type: CAZyme
Location: 14224 - 17250 (+)
Type: CAZyme
Location: 14224 - 17250 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1752_10_8 | vegetarian > omnivore | 1.10913 | 0.01021 |
| HRGMv2_1752_10_9 | vegan > omnivore | 1.20304 | 0.00732 |
| HRGMv2_1752_10_10 | vegan > omnivore | 2.66398 | 0.00732 |
| HRGMv2_1752_10_10 | vegetarian > omnivore | 1.79111 | 0.01021 |