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Cluster: HRGMv2_1752_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1752_5 HRGMv2_1752_5_52 48557 49438 + 3.A.1.15.4
TC HRGMv2_1752_5 HRGMv2_1752_5_53 49438 50334 + 3.A.1.15.4
TC HRGMv2_1752_5 HRGMv2_1752_5_54 50338 51189 + 3.A.1.15.4
TC HRGMv2_1752_5 HRGMv2_1752_5_55 51182 52015 + 3.A.1.15.4
pfam HRGMv2_1752_5 HRGMv2_1752_5_56 52050 53222 - MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31
CAZyme HRGMv2_1752_5 HRGMv2_1752_5_57 53219 54262 - GH3
Gene ID: HRGMv2_1752_5_52
Type: TC
Location: 48557 - 49438 (+)
Gene ID: HRGMv2_1752_5_53
Type: TC
Location: 49438 - 50334 (+)
Gene ID: HRGMv2_1752_5_54
Type: TC
Location: 50338 - 51189 (+)
Gene ID: HRGMv2_1752_5_55
Type: TC
Location: 51182 - 52015 (+)
Gene ID: HRGMv2_1752_5_56
Type: pfam
Location: 52050 - 53222 (-)
Gene ID: HRGMv2_1752_5_57
Type: CAZyme
Location: 53219 - 54262 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1752_5_54 vegan > omnivore 2.27078 0.00732
HRGMv2_1752_5_54 vegetarian > omnivore 1.77895 0.01021
HRGMv2_1752_5_55 vegan > omnivore 2.04201 0.00732
HRGMv2_1752_5_55 vegetarian > omnivore 1.21789 0.01021
HRGMv2_1752_5_56 vegetarian > omnivore 1.03362 0.01021

🧭 Explore Read Mapping of CGC

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