Cluster: HRGMv2_1752_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1752
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1752_1 | HRGMv2_1752_1_40 | 43137 | 44081 | + | 2.A.16.1.2 |
| TF | HRGMv2_1752_1 | HRGMv2_1752_1_41 | 44161 | 44874 | - | GntR |
| CAZyme | HRGMv2_1752_1 | HRGMv2_1752_1_42 | 45067 | 48840 | + | GH77 | GT35 |
| pfam | HRGMv2_1752_1 | HRGMv2_1752_1_43 | 48850 | 49641 | + | Exo_endo_phos |
| TC | HRGMv2_1752_1 | HRGMv2_1752_1_44 | 49652 | 51316 | + | 4.A.1.1.11 |
Gene ID: HRGMv2_1752_1_40
Type: TC
Location: 43137 - 44081 (+)
Type: TC
Location: 43137 - 44081 (+)
Gene ID: HRGMv2_1752_1_41
Type: TF
Location: 44161 - 44874 (-)
Type: TF
Location: 44161 - 44874 (-)
Gene ID: HRGMv2_1752_1_42
Type: CAZyme
Location: 45067 - 48840 (+)
Type: CAZyme
Location: 45067 - 48840 (+)
Gene ID: HRGMv2_1752_1_43
Type: pfam
Location: 48850 - 49641 (+)
Type: pfam
Location: 48850 - 49641 (+)
Gene ID: HRGMv2_1752_1_44
Type: TC
Location: 49652 - 51316 (+)
Type: TC
Location: 49652 - 51316 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.