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Cluster: HRGMv2_1750_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1750_3 HRGMv2_1750_3_39 42237 44141 + 2.A.37.1.2
pfam HRGMv2_1750_3 HRGMv2_1750_3_40 44177 46312 - UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st
TC HRGMv2_1750_3 HRGMv2_1750_3_41 46432 47418 - 3.A.1.15.5
TC HRGMv2_1750_3 HRGMv2_1750_3_42 47585 48346 - 3.A.16.1.3
CAZyme HRGMv2_1750_3 HRGMv2_1750_3_43 48346 49473 - GH102
Gene ID: HRGMv2_1750_3_39
Type: TC
Location: 42237 - 44141 (+)
Gene ID: HRGMv2_1750_3_40
Type: pfam
Location: 44177 - 46312 (-)
Gene ID: HRGMv2_1750_3_41
Type: TC
Location: 46432 - 47418 (-)
Gene ID: HRGMv2_1750_3_42
Type: TC
Location: 47585 - 48346 (-)
Gene ID: HRGMv2_1750_3_43
Type: CAZyme
Location: 48346 - 49473 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1750_3_40 vegan > omnivore 1.33616 0.00918
HRGMv2_1750_3_40 vegetarian > omnivore 1.34952 0.01189
HRGMv2_1750_3_41 vegan > omnivore 1.39517 0.00918
HRGMv2_1750_3_41 vegetarian > omnivore 1.05275 0.01189
HRGMv2_1750_3_42 vegan > omnivore 1.50301 0.00918
HRGMv2_1750_3_42 vegetarian > omnivore 1.46974 0.01189
HRGMv2_1750_3_43 vegetarian > omnivore 1.07097 0.01189

🧭 Explore Read Mapping of CGC

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