Cluster: HRGMv2_1750_CGC6
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1750_2 | HRGMv2_1750_2_261 | 266134 | 267978 | - | 3.A.1.106.2 |
| TF | HRGMv2_1750_2 | HRGMv2_1750_2_262 | 268055 | 268945 | - | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_1750_2 | HRGMv2_1750_2_263 | 269049 | 269393 | + | CMD |
| CAZyme | HRGMv2_1750_2 | HRGMv2_1750_2_264 | 269465 | 270520 | - | GT9 |
Gene ID: HRGMv2_1750_2_261
Type: TC
Location: 266134 - 267978 (-)
Type: TC
Location: 266134 - 267978 (-)
Gene ID: HRGMv2_1750_2_262
Type: TF
Location: 268055 - 268945 (-)
Type: TF
Location: 268055 - 268945 (-)
Gene ID: HRGMv2_1750_2_263
Type: pfam
Location: 269049 - 269393 (+)
Type: pfam
Location: 269049 - 269393 (+)
Gene ID: HRGMv2_1750_2_264
Type: CAZyme
Location: 269465 - 270520 (-)
Type: CAZyme
Location: 269465 - 270520 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_2_262 | vegetarian > vegan | 1.13766 | 0.03354 |
| HRGMv2_1750_2_263 | vegan > omnivore | 1.28154 | 0.00918 |
| HRGMv2_1750_2_263 | vegetarian > omnivore | 1.48740 | 0.01189 |
| HRGMv2_1750_2_264 | vegetarian > vegan | 1.12104 | 0.03370 |