Cluster: HRGMv2_1750_CGC5
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1750_2 | HRGMv2_1750_2_199 | 201683 | 203533 | + | 3.A.18.1.1 |
| CAZyme | HRGMv2_1750_2 | HRGMv2_1750_2_200 | 203629 | 205023 | + | GH23 |
| NULL(UNKNOWN) | HRGMv2_1750_2 | HRGMv2_1750_2_201 | 205080 | 205223 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_1750_2 | HRGMv2_1750_2_202 | 205269 | 205592 | - | Ribosomal_S30AE |
| TC | HRGMv2_1750_2 | HRGMv2_1750_2_203 | 205834 | 207204 | - | 2.A.25.1.4 |
Gene ID: HRGMv2_1750_2_199
Type: TC
Location: 201683 - 203533 (+)
Type: TC
Location: 201683 - 203533 (+)
Gene ID: HRGMv2_1750_2_200
Type: CAZyme
Location: 203629 - 205023 (+)
Type: CAZyme
Location: 203629 - 205023 (+)
Gene ID: HRGMv2_1750_2_201
Type:
Location: 205080 - 205223 (+)
Type:
Location: 205080 - 205223 (+)
Gene ID: HRGMv2_1750_2_202
Type: pfam
Location: 205269 - 205592 (-)
Type: pfam
Location: 205269 - 205592 (-)
Gene ID: HRGMv2_1750_2_203
Type: TC
Location: 205834 - 207204 (-)
Type: TC
Location: 205834 - 207204 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_2_200 | vegetarian > omnivore | 1.52847 | 0.01189 |
| HRGMv2_1750_2_201 | vegan > omnivore | 1.14035 | 0.00918 |
| HRGMv2_1750_2_201 | vegetarian > omnivore | 1.64716 | 0.01189 |