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Cluster: HRGMv2_1750_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1750_2 HRGMv2_1750_2_38 37002 37883 + 3.A.1.15.4
TC HRGMv2_1750_2 HRGMv2_1750_2_39 37883 38779 + 3.A.1.15.4
TC HRGMv2_1750_2 HRGMv2_1750_2_40 38783 39634 + 3.A.1.15.4
TC HRGMv2_1750_2 HRGMv2_1750_2_41 39627 40460 + 3.A.1.15.4
pfam HRGMv2_1750_2 HRGMv2_1750_2_42 40521 41138 - DNA_alkylation | HEAT_2
pfam HRGMv2_1750_2 HRGMv2_1750_2_43 41164 42336 - MTS | tRNA_U5-meth_tr | Methyltransf_31
CAZyme HRGMv2_1750_2 HRGMv2_1750_2_44 42333 43376 - GH3
Gene ID: HRGMv2_1750_2_38
Type: TC
Location: 37002 - 37883 (+)
Gene ID: HRGMv2_1750_2_39
Type: TC
Location: 37883 - 38779 (+)
Gene ID: HRGMv2_1750_2_40
Type: TC
Location: 38783 - 39634 (+)
Gene ID: HRGMv2_1750_2_41
Type: TC
Location: 39627 - 40460 (+)
Gene ID: HRGMv2_1750_2_42
Type: pfam
Location: 40521 - 41138 (-)
Gene ID: HRGMv2_1750_2_43
Type: pfam
Location: 41164 - 42336 (-)
Gene ID: HRGMv2_1750_2_44
Type: CAZyme
Location: 42333 - 43376 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1750_2_40 vegan > omnivore 2.15474 0.00918
HRGMv2_1750_2_40 vegetarian > omnivore 1.22422 0.01189
HRGMv2_1750_2_41 vegan > omnivore 1.90128 0.00918
HRGMv2_1750_2_41 vegetarian > omnivore 1.40244 0.01189
HRGMv2_1750_2_43 vegan > omnivore 1.06820 0.00918
HRGMv2_1750_2_43 vegetarian > omnivore 1.06090 0.01189

🧭 Explore Read Mapping of CGC

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