Cluster: HRGMv2_1750_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1750_1 | HRGMv2_1750_1_102 | 114587 | 115531 | + | 2.A.16.1.2 |
| TF | HRGMv2_1750_1 | HRGMv2_1750_1_103 | 115610 | 116323 | - | GntR |
| CAZyme | HRGMv2_1750_1 | HRGMv2_1750_1_104 | 116518 | 120291 | + | GH77 | GT35 |
| pfam | HRGMv2_1750_1 | HRGMv2_1750_1_105 | 120301 | 121092 | + | Exo_endo_phos |
| TC | HRGMv2_1750_1 | HRGMv2_1750_1_106 | 121103 | 122767 | + | 4.A.1.1.11 |
Gene ID: HRGMv2_1750_1_102
Type: TC
Location: 114587 - 115531 (+)
Type: TC
Location: 114587 - 115531 (+)
Gene ID: HRGMv2_1750_1_103
Type: TF
Location: 115610 - 116323 (-)
Type: TF
Location: 115610 - 116323 (-)
Gene ID: HRGMv2_1750_1_104
Type: CAZyme
Location: 116518 - 120291 (+)
Type: CAZyme
Location: 116518 - 120291 (+)
Gene ID: HRGMv2_1750_1_105
Type: pfam
Location: 120301 - 121092 (+)
Type: pfam
Location: 120301 - 121092 (+)
Gene ID: HRGMv2_1750_1_106
Type: TC
Location: 121103 - 122767 (+)
Type: TC
Location: 121103 - 122767 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_1_106 | vegan > omnivore | 1.17444 | 0.00918 |