Cluster: HRGMv2_1750_CGC19
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1750_22 | HRGMv2_1750_22_2 | 1353 | 3371 | - | GT41 |
| pfam | HRGMv2_1750_22 | HRGMv2_1750_22_3 | 3411 | 4748 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | HRGMv2_1750_22 | HRGMv2_1750_22_4 | 4914 | 5630 | + | 9.B.20.2.2 |
Gene ID: HRGMv2_1750_22_2
Type: CAZyme
Location: 1353 - 3371 (-)
Type: CAZyme
Location: 1353 - 3371 (-)
Gene ID: HRGMv2_1750_22_3
Type: pfam
Location: 3411 - 4748 (-)
Type: pfam
Location: 3411 - 4748 (-)
Gene ID: HRGMv2_1750_22_4
Type: TC
Location: 4914 - 5630 (+)
Type: TC
Location: 4914 - 5630 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_22_4 | vegetarian > omnivore | 1.07966 | 0.01189 |