Cluster: HRGMv2_1750_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1750_13 | HRGMv2_1750_13_1 | 3 | 848 | + | 1.B.40.1.5 |
| pfam | HRGMv2_1750_13 | HRGMv2_1750_13_2 | 979 | 2115 | + | DUF2827 |
| CAZyme | HRGMv2_1750_13 | HRGMv2_1750_13_3 | 2167 | 3711 | - | GT2 |
| TC | HRGMv2_1750_13 | HRGMv2_1750_13_4 | 3720 | 4907 | - | 2.A.33.1.2 |
| TC | HRGMv2_1750_13 | HRGMv2_1750_13_5 | 5110 | 6411 | + | 2.A.26.1.1 |
Gene ID: HRGMv2_1750_13_1
Type: TC
Location: 3 - 848 (+)
Type: TC
Location: 3 - 848 (+)
Gene ID: HRGMv2_1750_13_2
Type: pfam
Location: 979 - 2115 (+)
Type: pfam
Location: 979 - 2115 (+)
Gene ID: HRGMv2_1750_13_3
Type: CAZyme
Location: 2167 - 3711 (-)
Type: CAZyme
Location: 2167 - 3711 (-)
Gene ID: HRGMv2_1750_13_4
Type: TC
Location: 3720 - 4907 (-)
Type: TC
Location: 3720 - 4907 (-)
Gene ID: HRGMv2_1750_13_5
Type: TC
Location: 5110 - 6411 (+)
Type: TC
Location: 5110 - 6411 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_13_1 | vegetarian > omnivore | 1.02073 | 0.01189 |
| HRGMv2_1750_13_1 | vegetarian > vegan | 1.70171 | 0.03370 |
| HRGMv2_1750_13_2 | vegetarian > vegan | 1.07055 | 0.03370 |