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Cluster: HRGMv2_1750_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1750_10 HRGMv2_1750_10_7 3759 5168 + 2.A.1.3.51
TC HRGMv2_1750_10 HRGMv2_1750_10_8 5302 6948 + 3.A.1.5.27
pfam HRGMv2_1750_10 HRGMv2_1750_10_9 7015 7647 + PNPOx_N | PNP_phzG_C | Pyridox_oxase_2
CAZyme HRGMv2_1750_10 HRGMv2_1750_10_10 7723 8829 - GH177
pfam HRGMv2_1750_10 HRGMv2_1750_10_11 8840 9913 - GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
TF HRGMv2_1750_10 HRGMv2_1750_10_12 9903 10613 - GntR
TC HRGMv2_1750_10 HRGMv2_1750_10_13 10788 12014 + 2.A.1.12.1
TC HRGMv2_1750_10 HRGMv2_1750_10_14 12171 13556 + 2.A.47.5.2
Gene ID: HRGMv2_1750_10_7
Type: TC
Location: 3759 - 5168 (+)
Gene ID: HRGMv2_1750_10_8
Type: TC
Location: 5302 - 6948 (+)
Gene ID: HRGMv2_1750_10_9
Type: pfam
Location: 7015 - 7647 (+)
Gene ID: HRGMv2_1750_10_10
Type: CAZyme
Location: 7723 - 8829 (-)
Gene ID: HRGMv2_1750_10_11
Type: pfam
Location: 8840 - 9913 (-)
Gene ID: HRGMv2_1750_10_12
Type: TF
Location: 9903 - 10613 (-)
Gene ID: HRGMv2_1750_10_13
Type: TC
Location: 10788 - 12014 (+)
Gene ID: HRGMv2_1750_10_14
Type: TC
Location: 12171 - 13556 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1750_10_8 vegan > omnivore 1.10944 0.00918

🧭 Explore Read Mapping of CGC

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