Cluster: HRGMv2_1750_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1750_9 | HRGMv2_1750_9_23 | 24632 | 25405 | - | 3.A.1.14.19 |
| TC | HRGMv2_1750_9 | HRGMv2_1750_9_24 | 25405 | 26454 | - | 3.A.1.14.5 |
| STP | HRGMv2_1750_9 | HRGMv2_1750_9_25 | 26470 | 27585 | - | Peripla_BP_2 |
| pfam | HRGMv2_1750_9 | HRGMv2_1750_9_26 | 27685 | 28824 | - | Cytochrom_C | CCP_MauG |
| CAZyme | HRGMv2_1750_9 | HRGMv2_1750_9_27 | 28905 | 30023 | - | GH103 |
| CAZyme | HRGMv2_1750_9 | HRGMv2_1750_9_28 | 30057 | 30860 | - | GT2 |
| CAZyme | HRGMv2_1750_9 | HRGMv2_1750_9_29 | 31278 | 32159 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_1750_9 | HRGMv2_1750_9_30 | 32152 | 33351 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_1750_9 | HRGMv2_1750_9_31 | 33359 | 34129 | - | GT25 |
Gene ID: HRGMv2_1750_9_23
Type: TC
Location: 24632 - 25405 (-)
Type: TC
Location: 24632 - 25405 (-)
Gene ID: HRGMv2_1750_9_24
Type: TC
Location: 25405 - 26454 (-)
Type: TC
Location: 25405 - 26454 (-)
Gene ID: HRGMv2_1750_9_25
Type: STP
Location: 26470 - 27585 (-)
Type: STP
Location: 26470 - 27585 (-)
Gene ID: HRGMv2_1750_9_26
Type: pfam
Location: 27685 - 28824 (-)
Type: pfam
Location: 27685 - 28824 (-)
Gene ID: HRGMv2_1750_9_27
Type: CAZyme
Location: 28905 - 30023 (-)
Type: CAZyme
Location: 28905 - 30023 (-)
Gene ID: HRGMv2_1750_9_28
Type: CAZyme
Location: 30057 - 30860 (-)
Type: CAZyme
Location: 30057 - 30860 (-)
Gene ID: HRGMv2_1750_9_29
Type: CAZyme
Location: 31278 - 32159 (-)
Type: CAZyme
Location: 31278 - 32159 (-)
Gene ID: HRGMv2_1750_9_30
Type:
Location: 32152 - 33351 (-)
Type:
Location: 32152 - 33351 (-)
Gene ID: HRGMv2_1750_9_31
Type: CAZyme
Location: 33359 - 34129 (-)
Type: CAZyme
Location: 33359 - 34129 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_9_25 | vegan > omnivore | 1.73172 | 0.00918 |
| HRGMv2_1750_9_25 | vegetarian > omnivore | 1.15486 | 0.01189 |
| HRGMv2_1750_9_29 | vegetarian > omnivore | 1.95273 | 0.01189 |
| HRGMv2_1750_9_29 | vegetarian > vegan | 1.29465 | 0.03370 |