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Cluster: HRGMv2_1750_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1750_9 HRGMv2_1750_9_11 12002 14401 + GT51
TC HRGMv2_1750_9 HRGMv2_1750_9_12 14620 16524 + 2.A.108.2.10
TC HRGMv2_1750_9 HRGMv2_1750_9_13 16553 17074 + 2.A.108.2.10
pfam HRGMv2_1750_9 HRGMv2_1750_9_14 17185 18579 + YHS | FtrD-like
TC HRGMv2_1750_9 HRGMv2_1750_9_15 18579 19919 + 3.A.1.122.8
pfam HRGMv2_1750_9 HRGMv2_1750_9_16 19906 21039 + FtsX | MacB_PCD
TC HRGMv2_1750_9 HRGMv2_1750_9_17 21041 21712 + 3.A.1.122.8
Gene ID: HRGMv2_1750_9_11
Type: CAZyme
Location: 12002 - 14401 (+)
Gene ID: HRGMv2_1750_9_12
Type: TC
Location: 14620 - 16524 (+)
Gene ID: HRGMv2_1750_9_13
Type: TC
Location: 16553 - 17074 (+)
Gene ID: HRGMv2_1750_9_14
Type: pfam
Location: 17185 - 18579 (+)
Gene ID: HRGMv2_1750_9_15
Type: TC
Location: 18579 - 19919 (+)
Gene ID: HRGMv2_1750_9_16
Type: pfam
Location: 19906 - 21039 (+)
Gene ID: HRGMv2_1750_9_17
Type: TC
Location: 21041 - 21712 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1750_9_12 vegetarian > vegan 1.06438 0.03370
HRGMv2_1750_9_14 vegetarian > vegan 1.73189 0.02923

🧭 Explore Read Mapping of CGC

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