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Cluster: HRGMv2_1750_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1750_6 HRGMv2_1750_6_86 64154 65197 + GT9
TC HRGMv2_1750_6 HRGMv2_1750_6_87 65194 66099 + 2.A.7.3.58
CAZyme HRGMv2_1750_6 HRGMv2_1750_6_88 66096 67049 + GT9
TC HRGMv2_1750_6 HRGMv2_1750_6_89 67215 68294 + 1.B.1.3.3
pfam HRGMv2_1750_6 HRGMv2_1750_6_90 68493 69359 + HSP33
TC HRGMv2_1750_6 HRGMv2_1750_6_91 69700 71190 - 2.A.21.2.3
Gene ID: HRGMv2_1750_6_86
Type: CAZyme
Location: 64154 - 65197 (+)
Gene ID: HRGMv2_1750_6_87
Type: TC
Location: 65194 - 66099 (+)
Gene ID: HRGMv2_1750_6_88
Type: CAZyme
Location: 66096 - 67049 (+)
Gene ID: HRGMv2_1750_6_89
Type: TC
Location: 67215 - 68294 (+)
Gene ID: HRGMv2_1750_6_90
Type: pfam
Location: 68493 - 69359 (+)
Gene ID: HRGMv2_1750_6_91
Type: TC
Location: 69700 - 71190 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1750_6_88 vegan > omnivore 1.24973 0.00918
HRGMv2_1750_6_88 vegetarian > omnivore 1.53567 0.01189

🧭 Explore Read Mapping of CGC

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