Cluster: HRGMv2_1750_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1750_6 | HRGMv2_1750_6_4 | 2998 | 3813 | + | GT2 |
| TC | HRGMv2_1750_6 | HRGMv2_1750_6_5 | 3810 | 5186 | + | 2.A.38.1.1 |
| TC | HRGMv2_1750_6 | HRGMv2_1750_6_6 | 5265 | 5651 | + | 1.A.22.1.1 |
Gene ID: HRGMv2_1750_6_4
Type: CAZyme
Location: 2998 - 3813 (+)
Type: CAZyme
Location: 2998 - 3813 (+)
Gene ID: HRGMv2_1750_6_5
Type: TC
Location: 3810 - 5186 (+)
Type: TC
Location: 3810 - 5186 (+)
Gene ID: HRGMv2_1750_6_6
Type: TC
Location: 5265 - 5651 (+)
Type: TC
Location: 5265 - 5651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_6_4 | vegan > omnivore | 1.67844 | 0.00918 |
| HRGMv2_1750_6_4 | vegetarian > omnivore | 1.05331 | 0.01189 |
| HRGMv2_1750_6_5 | vegan > omnivore | 1.00161 | 0.00918 |
| HRGMv2_1750_6_5 | vegetarian > omnivore | 1.28549 | 0.00878 |
| HRGMv2_1750_6_6 | vegan > omnivore | 1.74357 | 0.00918 |
| HRGMv2_1750_6_6 | vegetarian > omnivore | 2.92588 | 0.01189 |
| HRGMv2_1750_6_6 | vegetarian > vegan | 1.18232 | 0.03370 |