Cluster: HRGMv2_1750_CGC10
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- CGC Family ID: CGCFAM_03481
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1750_5 | HRGMv2_1750_5_101 | 92242 | 93270 | + | GT9 |
| TC | HRGMv2_1750_5 | HRGMv2_1750_5_102 | 93220 | 93885 | - | 2.A.115.2.7 |
| pfam | HRGMv2_1750_5 | HRGMv2_1750_5_103 | 94076 | 95617 | + | YjjI-like |
| TC | HRGMv2_1750_5 | HRGMv2_1750_5_104 | 95661 | 97235 | - | 2.A.16.2.2 |
Gene ID: HRGMv2_1750_5_101
Type: CAZyme
Location: 92242 - 93270 (+)
Type: CAZyme
Location: 92242 - 93270 (+)
Gene ID: HRGMv2_1750_5_102
Type: TC
Location: 93220 - 93885 (-)
Type: TC
Location: 93220 - 93885 (-)
Gene ID: HRGMv2_1750_5_103
Type: pfam
Location: 94076 - 95617 (+)
Type: pfam
Location: 94076 - 95617 (+)
Gene ID: HRGMv2_1750_5_104
Type: TC
Location: 95661 - 97235 (-)
Type: TC
Location: 95661 - 97235 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_5_101 | vegan > omnivore | 1.49369 | 0.00918 |
| HRGMv2_1750_5_101 | vegetarian > omnivore | 1.14232 | 0.01189 |