Cluster: HRGMv2_1750_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1750
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1750_1 | HRGMv2_1750_1_3 | 1963 | 2220 | + | 8.A.8.1.1 |
| TC | HRGMv2_1750_1 | HRGMv2_1750_1_4 | 2300 | 4027 | + | 8.A.7.1.1 |
| TC | HRGMv2_1750_1 | HRGMv2_1750_1_5 | 4087 | 4587 | + | 4.A.1.1.1 |
| pfam | HRGMv2_1750_1 | HRGMv2_1750_1_6 | 4660 | 5859 | + | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | HRGMv2_1750_1 | HRGMv2_1750_1_7 | 5981 | 9007 | + | GH2 |
Gene ID: HRGMv2_1750_1_3
Type: TC
Location: 1963 - 2220 (+)
Type: TC
Location: 1963 - 2220 (+)
Gene ID: HRGMv2_1750_1_4
Type: TC
Location: 2300 - 4027 (+)
Type: TC
Location: 2300 - 4027 (+)
Gene ID: HRGMv2_1750_1_5
Type: TC
Location: 4087 - 4587 (+)
Type: TC
Location: 4087 - 4587 (+)
Gene ID: HRGMv2_1750_1_6
Type: pfam
Location: 4660 - 5859 (+)
Type: pfam
Location: 4660 - 5859 (+)
Gene ID: HRGMv2_1750_1_7
Type: CAZyme
Location: 5981 - 9007 (+)
Type: CAZyme
Location: 5981 - 9007 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D sp900756875
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_1750_1_3 | vegetarian > omnivore | 1.06385 | 0.01189 |
| HRGMv2_1750_1_5 | vegan > omnivore | 2.77372 | 0.00918 |
| HRGMv2_1750_1_5 | vegetarian > omnivore | 1.37357 | 0.01189 |