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Cluster: HRGMv2_1733_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1733_11 HRGMv2_1733_11_12 17459 19234 + 3.A.1.110.10
TC HRGMv2_1733_11 HRGMv2_1733_11_13 19227 20612 + 8.A.1.3.3
NULL(UNKNOWN) HRGMv2_1733_11 HRGMv2_1733_11_14 20615 21637 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_1733_11 HRGMv2_1733_11_15 21684 23024 + OEP | OEP
CAZyme HRGMv2_1733_11 HRGMv2_1733_11_16 23045 25507 + GT4
CAZyme HRGMv2_1733_11 HRGMv2_1733_11_17 25673 28168 + GT4
pfam HRGMv2_1733_11 HRGMv2_1733_11_18 28979 30667 + Glycos_transf_1 | Glyco_trans_1_4
pfam HRGMv2_1733_11 HRGMv2_1733_11_19 30682 33633 + RgpF
TC HRGMv2_1733_11 HRGMv2_1733_11_20 33668 34486 + 3.A.1.103.6
TC HRGMv2_1733_11 HRGMv2_1733_11_21 34476 35831 + 3.A.1.103.6
Gene ID: HRGMv2_1733_11_12
Type: TC
Location: 17459 - 19234 (+)
Gene ID: HRGMv2_1733_11_13
Type: TC
Location: 19227 - 20612 (+)
Gene ID: HRGMv2_1733_11_14
Type:
Location: 20615 - 21637 (+)
Gene ID: HRGMv2_1733_11_15
Type: pfam
Location: 21684 - 23024 (+)
Gene ID: HRGMv2_1733_11_16
Type: CAZyme
Location: 23045 - 25507 (+)
Gene ID: HRGMv2_1733_11_17
Type: CAZyme
Location: 25673 - 28168 (+)
Gene ID: HRGMv2_1733_11_18
Type: pfam
Location: 28979 - 30667 (+)
Gene ID: HRGMv2_1733_11_19
Type: pfam
Location: 30682 - 33633 (+)
Gene ID: HRGMv2_1733_11_20
Type: TC
Location: 33668 - 34486 (+)
Gene ID: HRGMv2_1733_11_21
Type: TC
Location: 34476 - 35831 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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