Cluster: HRGMv2_1733_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1733
- CGC Family ID: CGCFAM_00013
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_1733_2 | HRGMv2_1733_2_53 | 56911 | 57987 | - | GT28 |
| TC | HRGMv2_1733_2 | HRGMv2_1733_2_54 | 57969 | 59144 | - | 2.A.103.1.3 |
| pfam | HRGMv2_1733_2 | HRGMv2_1733_2_55 | 59141 | 60448 | - | FAD_binding_3 | Mur_ligase_C | Mur_ligase_M | NAD_binding_8 | MurD-like_N |
| TC | HRGMv2_1733_2 | HRGMv2_1733_2_56 | 60632 | 61708 | - | 9.B.146.1.6 |
Gene ID: HRGMv2_1733_2_53
Type: CAZyme
Location: 56911 - 57987 (-)
Type: CAZyme
Location: 56911 - 57987 (-)
Gene ID: HRGMv2_1733_2_54
Type: TC
Location: 57969 - 59144 (-)
Type: TC
Location: 57969 - 59144 (-)
Gene ID: HRGMv2_1733_2_55
Type: pfam
Location: 59141 - 60448 (-)
Type: pfam
Location: 59141 - 60448 (-)
Gene ID: HRGMv2_1733_2_56
Type: TC
Location: 60632 - 61708 (-)
Type: TC
Location: 60632 - 61708 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Species
Desulfovibrio porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.