Cluster: HRGMv2_1733_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_1733
- CGC Family ID: CGCFAM_09852
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_1733_51 | HRGMv2_1733_51_7 | 7439 | 9637 | + | 8.A.59.2.2 |
| TC | HRGMv2_1733_51 | HRGMv2_1733_51_8 | 9645 | 11684 | + | 8.A.59.4.1 |
| STP | HRGMv2_1733_51 | HRGMv2_1733_51_9 | 11692 | 14589 | + | EAL | GGDEF | SBP_bac_3 | SBP_bac_3 |
| CAZyme | HRGMv2_1733_51 | HRGMv2_1733_51_10 | 14719 | 15963 | - | GT4 |
| STP | HRGMv2_1733_51 | HRGMv2_1733_51_11 | 15978 | 18209 | - | PAS |
| TC | HRGMv2_1733_51 | HRGMv2_1733_51_12 | 18232 | 20049 | - | 3.A.1.109.4 |
Gene ID: HRGMv2_1733_51_7
Type: TC
Location: 7439 - 9637 (+)
Type: TC
Location: 7439 - 9637 (+)
Gene ID: HRGMv2_1733_51_8
Type: TC
Location: 9645 - 11684 (+)
Type: TC
Location: 9645 - 11684 (+)
Gene ID: HRGMv2_1733_51_9
Type: STP
Location: 11692 - 14589 (+)
Type: STP
Location: 11692 - 14589 (+)
Gene ID: HRGMv2_1733_51_10
Type: CAZyme
Location: 14719 - 15963 (-)
Type: CAZyme
Location: 14719 - 15963 (-)
Gene ID: HRGMv2_1733_51_11
Type: STP
Location: 15978 - 18209 (-)
Type: STP
Location: 15978 - 18209 (-)
Gene ID: HRGMv2_1733_51_12
Type: TC
Location: 18232 - 20049 (-)
Type: TC
Location: 18232 - 20049 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Species
Desulfovibrio porci
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.