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Cluster: HRGMv2_1733_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1733_37 HRGMv2_1733_37_11 10769 13207 + GT51
TC HRGMv2_1733_37 HRGMv2_1733_37_12 13257 14057 + 3.A.1.3.23
TC HRGMv2_1733_37 HRGMv2_1733_37_13 14130 15650 + 9.B.34.1.3
pfam HRGMv2_1733_37 HRGMv2_1733_37_14 15704 16630 + PCMT | GCD14
TC HRGMv2_1733_37 HRGMv2_1733_37_15 16627 16953 + 2.A.7.1.10
pfam HRGMv2_1733_37 HRGMv2_1733_37_16 17149 18378 - Lar_N
TF HRGMv2_1733_37 HRGMv2_1733_37_17 18413 19069 - GntR
TC HRGMv2_1733_37 HRGMv2_1733_37_18 19149 20435 - 2.A.56.1.5
pfam HRGMv2_1733_37 HRGMv2_1733_37_19 20432 20938 - DctQ
TC HRGMv2_1733_37 HRGMv2_1733_37_20 21028 22071 - 2.A.56.1.2
Gene ID: HRGMv2_1733_37_11
Type: CAZyme
Location: 10769 - 13207 (+)
Gene ID: HRGMv2_1733_37_12
Type: TC
Location: 13257 - 14057 (+)
Gene ID: HRGMv2_1733_37_13
Type: TC
Location: 14130 - 15650 (+)
Gene ID: HRGMv2_1733_37_14
Type: pfam
Location: 15704 - 16630 (+)
Gene ID: HRGMv2_1733_37_15
Type: TC
Location: 16627 - 16953 (+)
Gene ID: HRGMv2_1733_37_16
Type: pfam
Location: 17149 - 18378 (-)
Gene ID: HRGMv2_1733_37_17
Type: TF
Location: 18413 - 19069 (-)
Gene ID: HRGMv2_1733_37_18
Type: TC
Location: 19149 - 20435 (-)
Gene ID: HRGMv2_1733_37_19
Type: pfam
Location: 20432 - 20938 (-)
Gene ID: HRGMv2_1733_37_20
Type: TC
Location: 21028 - 22071 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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