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Cluster: HRGMv2_1728_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_1728_22 HRGMv2_1728_22_37 36881 37843 + GT2
TC HRGMv2_1728_22 HRGMv2_1728_22_38 38328 39686 + 2.A.25.1.9
pfam HRGMv2_1728_22 HRGMv2_1728_22_39 39958 40770 + Cytochrom_CIII | Cytochrom_CIII
NULL(UNKNOWN) HRGMv2_1728_22 HRGMv2_1728_22_40 40781 42052 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_1728_22 HRGMv2_1728_22_41 42052 43011 + 3.D.6.1.2
TC HRGMv2_1728_22 HRGMv2_1728_22_42 43014 43592 + 3.D.6.1.3
TC HRGMv2_1728_22 HRGMv2_1728_22_43 43603 44283 + 3.D.6.1.2
TC HRGMv2_1728_22 HRGMv2_1728_22_44 44311 44886 + 3.D.6.1.2
TC HRGMv2_1728_22 HRGMv2_1728_22_45 44936 45868 + 3.D.6.1.3
Gene ID: HRGMv2_1728_22_37
Type: CAZyme
Location: 36881 - 37843 (+)
Gene ID: HRGMv2_1728_22_38
Type: TC
Location: 38328 - 39686 (+)
Gene ID: HRGMv2_1728_22_39
Type: pfam
Location: 39958 - 40770 (+)
Gene ID: HRGMv2_1728_22_40
Type:
Location: 40781 - 42052 (+)
Gene ID: HRGMv2_1728_22_41
Type: TC
Location: 42052 - 43011 (+)
Gene ID: HRGMv2_1728_22_42
Type: TC
Location: 43014 - 43592 (+)
Gene ID: HRGMv2_1728_22_43
Type: TC
Location: 43603 - 44283 (+)
Gene ID: HRGMv2_1728_22_44
Type: TC
Location: 44311 - 44886 (+)
Gene ID: HRGMv2_1728_22_45
Type: TC
Location: 44936 - 45868 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_1728_22_42 vegetarian > vegan 1.14609 0.03101

🧭 Explore Read Mapping of CGC

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