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Cluster: HRGMv2_1726_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_1726_2 HRGMv2_1726_2_29 30305 31213 + 3.A.1.4.1
TC HRGMv2_1726_2 HRGMv2_1726_2_30 31265 32455 + 3.A.1.4.8
TC HRGMv2_1726_2 HRGMv2_1726_2_31 32452 33240 + 3.A.1.4.10
TC HRGMv2_1726_2 HRGMv2_1726_2_32 33233 33937 + 3.A.1.4.8
CAZyme HRGMv2_1726_2 HRGMv2_1726_2_33 34352 35437 - GT1
pfam HRGMv2_1726_2 HRGMv2_1726_2_34 35577 36848 + Metallophos
TC HRGMv2_1726_2 HRGMv2_1726_2_35 36848 40798 + 1.C.105.2.9
pfam HRGMv2_1726_2 HRGMv2_1726_2_36 41117 41497 + GtrA_DPMS_TM
CAZyme HRGMv2_1726_2 HRGMv2_1726_2_37 41589 42596 - GT81
Gene ID: HRGMv2_1726_2_29
Type: TC
Location: 30305 - 31213 (+)
Gene ID: HRGMv2_1726_2_30
Type: TC
Location: 31265 - 32455 (+)
Gene ID: HRGMv2_1726_2_31
Type: TC
Location: 32452 - 33240 (+)
Gene ID: HRGMv2_1726_2_32
Type: TC
Location: 33233 - 33937 (+)
Gene ID: HRGMv2_1726_2_33
Type: CAZyme
Location: 34352 - 35437 (-)
Gene ID: HRGMv2_1726_2_34
Type: pfam
Location: 35577 - 36848 (+)
Gene ID: HRGMv2_1726_2_35
Type: TC
Location: 36848 - 40798 (+)
Gene ID: HRGMv2_1726_2_36
Type: pfam
Location: 41117 - 41497 (+)
Gene ID: HRGMv2_1726_2_37
Type: CAZyme
Location: 41589 - 42596 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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